I bought a Kona Jake from recycled cycles in seattle and although I like the guys there I'd like to bring my bike in to a shop with a full fit program to swap out the stem/whatever else I might need to set my mind and body at ease.

Any suggestions around the Seattle area?

Sammamish Valley Cycle in Redmond has a fit program with video analysis. I believe that Gerk's Alpine Hut in Redmond does the Specialized fit program with video as well.

Go to R+E Cycles and talk to Smiley. They're not far from Recycled Cycles. www.rodcycle.com

+1 for R+E if you're looking to stay on the Seattle side of the lake.
+1 for Sammamish Valley Cycles if you're willing to travel to the eastside. <-- personally biased

I had a Serotta Fit done by Rick Olsen at SVC before finally deciding on which bike to buy, and he did all the final fit work once the bike arrived. I can't say I've been dissappointed by anything about the entire process.