I rode over a baby skunk once at night while out on a park road loop - I saw the stripe and caught a tiny whiff of odor as I heard the crunch of bones under my wheel. I didn't smell anymore skunk though, so I thought great, he missed me. as soon as I stopped, it was a whole different story - I stunk, my bike stunk, my shoes got hit hard and really smelled.
2 cans of lysol, 3 ammonia baths and soaking my clothes in tomato juice for a few hours got rid of most of it over a week or so, but it was horrible.