Originally Posted by
praveendv
531phile: I trued all the spokes to around 50kgf drive side and little less on non drive side.
That's about half way there. DS spokes should be 110+ depending on parts used.
Originally Posted by
praveendv
... I got scared after what I found and stopped it.
Odds are that at that tension your wheel is so floppy that the spokes aren't really pulling enough to be able to influence the rim to any significant degree. You really need to take the tension higher before you can say anything. Take up the slack first, then you can see how it goes.
Besides, you're not telling how big deviations you are seeing. If we're talking centimeters I might be concerned, but if it's down in the mms I'd happily go ahead.