Glad you and the jogger are ok.
I've seen joggers with headphones on Kelly Drive get whacked because they tried to pass walkers, then get collide with a bicycle behind them because they cannot hear and rarely look behind them. At the same time, I see people on road bikes ride on Kelly drive all the time in packs going ridiculously fast. It sucks to see or be in collisions because people are reckless or oblivious to their surroundings.
Also, I frequently see joggers jog on the city bike lanes, taking the whole lane up and wearing headphones. AGH! This is very annoying.
Hopefully that Jogger won't make the same mistake again, and use proper caution when using a shared trail.