yikes.

leave your fit the way it was. Go back to your previous setup (saddle, bibs, and bike setup). As a control, see if the issue goes away. Then, start changing things one by one, to see what is actually causing the problem. Go all 'scientific method' on your balls.

of course, getting set up with a pro fit will help alleviate the trial and error of any fit issues (saddle height, angle, setback, knee messings up, etc)