Not sure if it's the same everywhere, but here in Seattle metro area people use the PnR lots for bi-modal commuting all the time. Before I built my endurance up to doing my entire commute distance, I used to drive to the PnR lot halfway to work, then ride the rest of the way. Never had any problems.
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"I feel like my world was classier before I found cyclocross."
- Mandi M.