Joined: Feb 2012
Posts: 19,361
Likes: 5,500
From: Rochester, NY
Bikes: Stewart S&S coupled sport tourer, Stewart Sunday light, Stewart Commuting, Stewart Touring, Co Motion Tandem, Stewart 3-Spd, Stewart Track, Fuji Finest, Mongoose Tomac ATB, GT Bravado ATB, JCP Folder, Stewart 650B ATB
By sitting flush do you mean that the fork "crown" almost but not quite (one really doesn't want the fork to touch) the lower face of the head tube? If so then there's a good chance that the forks and the frames might not be interchangeable. Or not without results that are out of the usual arrangement most consider to be "right".
It would be nice if we had the full picture, the complete story before we start to suggest a solution/path to take. Maybe describe/photos of both frames and both forks to start with. Andy
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AndrewRStewart