The puller drive screw was not centered over the spindle, thus the force being applied was not effective. It is tough to actually center the screw using a 3-jaw puller in this application. A 2-jaw will sometimes work better. The best solution is to use a bearing separator behind the arm in conjunction with a steering wheel puller (the kind with slotted arms for bolts that screw into the bearing separator).
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2010 Cannondale CAAD9-4, 1978 Jack Taylor "Tour of Britain" #7338, 1969 Jack Taylor Ladies "Tourist" #5935 (wife's), 2010 Specialized Dolce (wife's)