Let me understand this (and I am not defending Litespeed a I personally would not want that close of clearance for the type of riding I do. I am just trying to be realistic):
1. You purchased the frame from an out of state Litespeed dealer. You selected the components. Had a non-Litespeed dealer wrench assemble the bike. You ran into problems.
2. Litespeed looked @ the frame @ their expense, stated that the frame meets the 06 model specs & is proper when assembled with their factory standard components. Litespeed did not charge you.
3. The LBS Litespeed dealer didn't profit from the sale of the frame. They swapped components from frame to frame so you could ride while this was/is being sorted out. Presumably, they make some profit from the swap out? Did they?
4. Currently, you do not like the frames specs and are returning it to Litespeed through the LBS (who didn't sell it) and are getting a full credit?
5. Through all of this, you are losing approx. $100, the amount you paid for a non-involved, non-LBS, non-Litespeed dealer to assemble the bike?
6. And you are upset???
If I understand this correctly, you are coming out of this entire ordeal very clean. Most shops who didn't sell the frame, and some manufactures, I know would have told you to pound sand.
My suggestion is to suck it up & write the $100 off. When one is dealing with upper end bikes such as the Litespeed Ultimate, there is darn little one can do for $100.
Perhaps, Litespeed may throw you a bone, ie. a $100 discount towards a new Litespeed frame (assembled I would hope) as goodwill/
PR gesture. Hopefully, the LBS will not charge you additionally for their time.
I respectfully suggest to you that you:
1. Be polite and respectfull when you make your request to Litespeed &/or the selling vendor and
2. Give and send that LBS as much business as possible as I suspect that you are darn close to the end of everyone's good will.
On Edit: Perhaps you maybe able to swap the 06 frame for an 05. Certainly, there must be one somewhere in the Litespeed inentory.
Just my $02. & Good luck with it. Bob