With hips out of alignment, try a chiropractor, or maybe a shim under your cleat to compensate. I've found with adjustments, that sometimes if you're constantly moving things around, you're never adjusting to the last adjustment. Try riding a bit longer when you get to an adjustment that is close to correct based on fit calculators and see if your body adjusts. At first glance, I'd say your seat looks just a little low. Thigh pain I guess could be cleat positioning so check that out. I do know that constantly making adjustments, and never feeling quite comfy is frustrating..but letting your body adjust to changes can help allot. I'm no expert, but hope this helps!

Hang in there!