Thanks for all the advice!
I don't have any pains that I can't attribute to simpler changes. I have some knee pain at the moment but thats only developed in the past month and I'm fairly certain that I need to adjust my shoes. (I've played a ton of soccer and my feet turn outward more than is healthy when cycling. but i'll figure it out in time) My ass gets a bit sore but thats probably a seat problem and completely common with all cyclists.
I might stop by my LBS and see if they can sell me on a new bike but its much more likely that i'll order a ton of parts.
I got intimidated for a bit but I'm feeling much better know. I guess its just the growing pains of going from a novice to real cyclist. The pain is an honor - in the general population, how many people make it this far?