Brandon,
Welcome to the world of roadbikes, your going to love it.
With only 35 miles on the bike, I think you need to back off making any adjustments. Get a few hundred miles on it, that way you get into "roadbike shape". Also, make sure your not locking your elbows, they should have a slight bend to them. A lot of those pains in your neck and hands will get better as you put on a few more miles.
Just my $.02